species:   Fuoxy
pid:       PID0819
parent:    Fon_hyphae-m0012
paralog:   
locus:     Supercontig_1.4:1011553-1011904
matures:   ['AGGGCAGAGGGAGGAGGGGA', 'CCCCAUCUUUUGCCCCGC']
srr:       SRR3921570
genome:    /Users/jax/+Genomes/Fungal_genomes/Fuoxy.broad.fusarium_oxysporum_f._sp._melonis_26406_1_supercontigs.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Jiang2017-hp.SRR3921570.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Jiang2017-hp.SRR3921570.cram Supercontig_1.4:1011553-1011904

0 out of bounds
43 alignments
43 proper strand
36 stranded perfect matches

         ********************                                                                                                                                                                                                                                                                                                   **********************          
GGACCAAGCUUCCCCAUCUUUUGCCCCGCCCACAGGAGAUCAAGCUCCAACGACAGACAGGGCAGCUGUGAGUAAGUAAGUAUGCAAGAGUGAGUGAGCUCUGCUAUGACAUGUCUGAGUCGUACACGUAAACGUCAGAUCAGGUACAAAGAAGUUGGCAGGGGAGGAAAAGAGUUGCACCCCGCAAUAAGUGAAGCUCAGUGAAUUGAAUCGGUUAGUGGCAGUGAAGAGAAGCUGCAGUGGCUGGAACAUGGAGGAAAACGGUUCAGAGUUGAAAUUUGUCUCACCAAAUGGUGACAUCAUCACAUCUGGUGACGACACAAGGGCAGAGGGAGGAGGGGAGAACCGAGAA
........(((((((.((((((((((.(((.((.((((......)))).((.((..((((.....))))..))..))......(((.((((......)))))))..((((.(((((((..(((........)))))))).)).)).)).....)).))).((((.(.((.....)).).)))).((((.(.(((...))).)..))))...((((((.((.((((........)))))).))))))((((.((........))))))............((((((((((.(((.(((.....)))))).)))))).))))...))))))))))..).)))))).........
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGCAGAGGGAGGAGGGGA---------- l=20 a=26 c
-----------CCCCAUCUUUUGCCCCGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=18 a=0 c*
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGCAGAGGGAGGAGGGGA---------- l=20 a=26 ma
-----------CCCCAUCUUUUGCCCCGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=18 a=0 ma*

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGCAGAGGGAGGAGGGGA---------- l=19 a=2 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGCAGAGGGAGGAGGGGAa--------- l=20 a=1 
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGuGCAGAGGGAGGAGGGGA---------- l=20 a=1 
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGCAGAGGGAGGAGGGGA---------- l=20 a=26 (c,ma)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGCAGAGGGAGGAGGuGA---------- l=20 a=1 
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGCAGAGGGAGGAGGGGAG--------- l=21 a=3 
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGCAGAGGGAGGAGGGGAa--------- l=21 a=4 
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGCAGAGGGAGGAGGGGAGA-------- l=22 a=3 
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGCAGAGGGAGGAGGGGAGAA------- l=23 a=1 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGGCAGAGGGAGGAGGGGA---------- l=21 a=1 

mb-01011
ax-1010011
ku-01
ss-111101111010
fn-111
